O. Zemb, M. Lee, M. L. Gutierrez-Zamora, J. Hamelin, K. Coupland, N. H. Hazrin-Chong, I. Taleb, M. Manefield (2011) Improvement of RNA-SIP by pyrosequencing to identify putative 4-n-nonylphenol degraders in activated sludge. Water Research. doi:10.1016/j.watres.2011.10.047

Matthew Lee, Adrian Low, Olivier Zemb, Joanna Koenig, Astrid Michaelsen and Mike Manefield (2011) Complete chloroform dechlorination by organochlorine respiration and fermentation. Environmental Microbiology. DOI: 10.1111/j.1462-2920.2011.02656.x

Torsten Thomas, Ilona Kindinger, Dan Yu, Meera Esvaran, Linda Blackall, Hugh Forehead, Craig Johnson and Mike Manefield. (2011) An experimental model for the spatial structuring and selection of bacterial communities. Journal of Microbiological Methods. doi:10.1016/j.mimet.2011.08.010.

Maria-Luisa Gutierrez-Zamora, Olivier Zemb, Mike Manefield (2011) D

irect rRNA Fingerprinting, a novel method to profile low diversity microbial communities. Microbial Ecology. 62: 177-187.

Zemb O, Lee M, Low A, Manefield M. (2010) Reactive iron barriers: a niche enabling microbial dehalorespiration of 1,2-dichloroethane. Appl Microbiol Biotechnol. 88:319-25.    

M Manefield, M-L Gutierrez-Zamora and A. Whiteley (2010) Chapter 3 - RNA based stable isotope probing, in Stable Isotopes in Microbial Molecular Ecology. Eds A. Whiteley and C. Murrell. ASM Press.

Guitirrez-Zamora, M. and M. Manefield (2010) An appraisal of methods for linking environmental processes to specific microbial taxa. Reviews in Environmental Science and Biotechnology. 9, 153-185. 

Yee, L., Aagaard, V., Johnstone, A., Lee, M., Kjelleberg, S. and M. Manefield (2010) Development of a treatment solution for reductive dechlorination of hexachloro-1,3-butadiene in vadose zone soil. Biodegradation. 21, 947-956.

Moreno, A., Matz, C., Kjelleberg, S. and M. Manefield (2010) Identification of ciliate grazers of autotrophic bacteria in ammonia-oxidizing activated sludge by RNA stable isotope probing. Applied and Environmental Microbiology. 76, 2203-2211.

Lee, M., Cord-Ruwisch, R. and M. Manefield (2010) A process for the purification of organochlorine contaminated activated carbon: Sequential solvent purging and reductive dechlorination. Water Research. 44: 1580-1590.

Watanabe, K., Manefield, M., Lee, M. and A. Kouzuma (2009) Electron shuttles in biotechnology. Current Opinion in Biotechnology. 20, 633-641.

James, D., Cord-Ruwisch, R., Schleheck, D., Lee, M. and M. Manefield (2008) Cyanocobalamin enables activated sludge bacteria to dechlorinate hexachloro-1,3-butadiene to non-chlorinated gases. The Bioremediation Journal. 12, 177-184.

Matz C, Moreno AM, Alhede M, Manefield M, Hauser AR, Givskov M, Kjelleberg S. (2008) Pseudomonas aeruginosa uses type III secretion system to kill biofilm-associated amoebae. ISME J. 8, 843–852.

Manefield M. (2008) The ecology of RNA. ISME J. 2:1-2.

Adrian Low, David Schleheck, Muoi Khou, Vibeke Aagaard, Matthew Lee and Mike Manefield (2007) Options for in situ remediation of soil contaminated with a mixture of perchlorinated compounds. The Bioremediation Journal. 11:113-124.

Mike Manefield, Rob Griffiths, Niall P. McNamara, Darren Sleep, Nick Ostle and Andrew Whiteley (2007) Insights into the fate of a ¹³C labelled phenol pulse for stable isotope probing (SIP) experiments. Journal of Microbiological Methods. 362:1235-40.

Andrew S. Whiteley, Bruce Thomson, Tillmann Lueders and Mike Manefield (2007) RNA Stable-Isotope Probing. Nature Protocols. 2:838-44.

Josh D. Neufeld, Jyotsna Vohra, Marc G. Dumont, Tillmann Lueders, Mike Manefield, Michael W. Friedrich, J. Colin Murrell (2007) DNA stable-isotope probing. Nature Protocols. 2:860-6.

Mike Manefield & Andrew Whiteley (2007) AHLs - Chameleons of Bioactivity. Proc. R. Soc. B. 362: 1235-1240.

Mike Manefield, Andrew Whiteley, Tom Curtis, Kazuya Watanabe (2007) The influence of sustainability and immigration in assembling bacterial populations of known size and function. Microbial Ecology. 69:340-4.

Mike Manefield, Diane McDougald, Scott Rice and Staffan Kjelleberg. (2006) Bacterial Communication: When does a metabolite become a signal. Microbiology Australia. 27: 115-117.

Kasai Y, Takahata Y, Manefield M, Watanabe K. (2006) RNA-Based Stable Isotope Probing and Isolation of Anaerobic Benzene-Degrading Bacteria from Gas-Contaminated Groundwater. Appl Environ Microbiol. 72: 3586-92.

Whiteley, A. S., Manefield, M., Lueders, T. (2006) Unlocking the ‘microbial black box’ using RNA-based stable isotope probing technologies. Current Opinion in Biotechnology. 17:67-71.

Mike Manefield, Robert I. Griffiths, Mary Beth Leigh, Ray Fisher, Andrew S. Whiteley (2005) Functional and compositional comparison of two activated sludge communities remediating coking effluent. Environmental Microbiology. 7: 715-22.

V. P. Mason, G. H. Markx, I. P. Thompson, J. S. Andrews, & M. Manefield. (2005) Colonial architecture affects bacterial intercellular signal accumulation. FEMS Microbiology Letters. 244: 121-127.

Mike Manefield, Robert I. Griffiths, Andrew S. Whiteley & Mark J. Bailey (2005) Chapter 23 - Stable Isotope Probing: A critique of its role in linking phylogeny and function, in Nucleic Acids and Proteins in Soil. Eds. Nannipieri & Smalla. Springer-Verlag, Heidelberg.

Robert I. Griffiths, Mike Manefield, Andrew S. Whiteley & Mark J. Bailey (2004) Chapter 1.11 – DNA and RNA extraction from soil, in Molecular Microbial Ecology Manual. Eds. Kowalchuk, G. A., Brujin, F. J. d., Head, I. M., Akkermans, A. D. & J. D. v. Elsas. Springer-Verlag, Heidelberg.

Andrew S. Whiteley, Mike Manefield, Mark Bailey, Jim Philp, Siouxsie Wiles, Malcolm Fisher, Paul Whitby (2004) The Microbiology of an ‘Undisclosed Vitox System in the north of England’. Proceedings of the Coke Oven Managers Association.

Manefield, M. et al. (2004) What can stable isotope probing do for bioremediation? International Biodeterioration and Biodegradation. 54: 163-166.

Robert I. Griffiths, Mike Manefield, Nick Ostle, Niall Mc Namara, Anthony G. O’Donnell, Mark J. Bailey, & Andrew S. Whiteley. (2004). ¹³CO₂ Pulse labelling of plants in tandem with stable isotope probing: Methodological considerations for examining microbial function in the rhizosphere. Journal of Microbiological Methods. 58: 119-129.

Valle, A., Bailey, M. J., Whiteley, A. S., & M. Manefield (2004) N -acyl-L-homoserine lactones (AHLs) affect microbial community composition and function in activated sludge. Environmental Microbiology. 6: 424-433.

Lueders, T., Manefield,. M & M. Friedrich (2004) Enhanced sensitivity of DNA- and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients. Environmental Microbiology. 6: 73-78.

Manefield, M. et al. (2003) Controlling bacterial infection by inhibiting intercellular signalling. Current Medicinal Chemistry – Anti-Infective Agents. 2: 213-218.

Ostle, N. et al. (2003) Microbial turnover in a grassland soil using a ¹³CO₂ spike. Soil Biology and Biogeochemistry. 35: 877-885.

Whiteley, A. S. et al. (2005) Lessons from the genomes: Microbial ecology and genomics (Chapter 10, p241-260) in Molecular Microbial Ecology. Eds M. Osbourne & C. Smith. Routledge.

Manefield, M. et al. (2003) Are you out there? Intercellular signalling in the microbial world (Chapter 15, pp231-248) in Mechanisms of Genomic Evolution in Bacteria (Miller, B & Day, M. eds.). ASM Press, Washington DC.

Hentzer, M. et al. (2003) Attentuation of Pseudomonas aeruginosa virulence by quorum sensing inhibitors. EMBO J. 148: 3803-3815.

Manefield, M. & S. L. Turner. (2002) Quorum sensing in context: out of molecular biology and into microbial ecology. Microbiol. 148: 3762-3764.

Manefield, M. et al. (2002). Technical considerations for RNA-based stable isotope probing: an approach to associating microbial diversity with microbial community function. Rapid Communications in Mass Spectrometry 16, pp. 2179-2183.

Manefield, M. et al. (2002) RNA stable isotope probing, a novel means of linking microbial community function to phylogeny. Appl. Environ. Microbiol. 68: 5367-5373.

Manefield, M. et al. (2001) Halogenated furanones inhibit quorum sensing through accelerated LuxR turnover . Microbiol. 148: 1119-1127.

Manefield, M. et al. (2001). Halogenated furanones from the red alga, Delisea pulchra, inhibit carbapenem antibiotic synthesis and exoenzyme virulence factor production in the phytopathogen Erwinia carotovora. FEMS Microbiol Lett. 205: 131-8.

Manefield, M. et al. (2000). Inhibition of luminescence and virulence in the black tiger prawn (Penaeus monodon) pathogen Vibrio harveyi by intercellular signal antagonists. Applied and Environmental Microbiology. 66: 2079-2084

Rasmussen T. B. et al. (2000). How Delisea pulchra furanones affect quorum sensing and swarming motility in Serratia liquefaciens MG1. Microbiology. 146: 3237-44.

Manefield, M. et al. (1999) Evidence that halogenated furanones from Delisea pulchra inhibit acylated homoserine lactone (AHL)-mediated gene expression by displacing the AHL signal from its receptor protein. Microbiology. 145: 283-291.

Holden M. T. et al. (1999) Quorum-sensing cross talk: isolation and chemical characterization of cyclic dipeptides from Pseudomonas aeruginosa and other gram-negative bacteria. Mol Microbiol 33:1254-66.

de Nys, R. et al. (1999). Cross-talk in bacterial extracellular signalling systems. In Microbial Biosystems: New Frontiers (Conference Proceedings) eds. Bell, C. R., Brylinsky, M., and P. Johnson-Green. Atlantic Canada Society for Microbial Ecology. Halifax.

Kjelleberg, S. et al. (1997) Do marine natural products interfere with prokaryotic AHL regulatory systems? Aqua. Microbial. Ecol. 13: 85-93.

Givskov, M. et al. (1996) Eukaryotic interference with homoserine lactone mediated prokaryotic signalling. J Bact. 178: 6618-6622.